J3_9QEG_027
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QEG_027 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1036
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9QEG|1|Aa|C|1074
9QEG|1|Aa|G|1075
9QEG|1|Aa|U|1076
9QEG|1|Aa|C|1077
9QEG|1|Aa|A|1078
9QEG|1|Aa|G|1079
*
9QEG|1|Aa|C|1118
9QEG|1|Aa|G|1119
9QEG|1|Aa|C|1120
9QEG|1|Aa|A|1121
9QEG|1|Aa|A|1122
9QEG|1|Aa|C|1123
9QEG|1|Aa|C|1124
*
9QEG|1|Aa|G|1197
9QEG|1|Aa|A|1198
9QEG|1|Aa|U|1199
9QEG|1|Aa|G|1200
9QEG|1|Aa|A|1201
9QEG|1|Aa|C|1202
9QEG|1|Aa|G|1203
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ac
- Small ribosomal subunit protein uS3
- Chain Ae
- Small ribosomal subunit protein uS5
- Chain Ai
- Small ribosomal subunit protein uS9
- Chain Aj
- Small ribosomal subunit protein uS10
- Chain An
- Small ribosomal subunit protein uS14B
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