J3_9QEG_028

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_028 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0989

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9QEG|1|Aa|U|1084
9QEG|1|Aa|G|1085
*
9QEG|1|Aa|U|1094
9QEG|1|Aa|G|1095
9QEG|1|Aa|U|1096
9QEG|1|Aa|U|1097
*
9QEG|1|Aa|G|1110
9QEG|1|Aa|C|1111
9QEG|1|Aa|A|1112
9QEG|1|Aa|A|1113

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

Small ribosomal subunit protein uS2

Chain Ae

Small ribosomal subunit protein uS5