J3_9QEG_029

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

9QEG|1|Aa|U|1250, 9QEG|1|Aa|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_029 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1236

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9QEG|1|Aa|C|1247
9QEG|1|Aa|A|1248
9QEG|1|Aa|A|1249
9QEG|1|Aa|U|1250
9QEG|1|Aa|G|1251
*
9QEG|1|Aa|C|1306
9QEG|1|Aa|U|1307
9QEG|1|Aa|C|1308
9QEG|1|Aa|A|1309
9QEG|1|Aa|G|1310
9QEG|1|Aa|U|1311
9QEG|1|Aa|U|1312
9QEG|1|Aa|C|1313
*
9QEG|1|Aa|G|1344
9QEG|1|Aa|C|1345
9QEG|1|Aa|U|1346
9QEG|1|Aa|G|1347

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

Small ribosomal subunit protein uS7

Chain Am

Small ribosomal subunit protein uS13