J3_9QEH_006
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9QEH|1|A|U|731, 9QEH|1|A|G|837, 9QEH|1|A|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QEH_006 not in the Motif Atlas
- Homologous match to J3_4WF9_002
- Geometric discrepancy: 0.0882
- The information below is about J3_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9QEH|1|A|U|728
9QEH|1|A|G|729
9QEH|1|A|A|730
9QEH|1|A|U|731
9QEH|1|A|C|732
9QEH|1|A|U|733
9QEH|1|A|A|734
*
9QEH|1|A|U|818
9QEH|1|A|A|819
9QEH|1|A|G|820
*
9QEH|1|A|C|836
9QEH|1|A|G|837
9QEH|1|A|A|838
9QEH|1|A|A|839
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: