3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
9QIW|1|L5|U|354, 9QIW|1|L5|A|362, 9QIW|1|L8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9QIW_003 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0656
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

9QIW|1|L5|C|351
9QIW|1|L5|G|352
9QIW|1|L5|A|353
9QIW|1|L5|U|354
9QIW|1|L5|A|355
9QIW|1|L5|G|356
9QIW|1|L5|U|357
9QIW|1|L5|C|358
9QIW|1|L5|A|359
9QIW|1|L5|A|360
9QIW|1|L5|C|361
9QIW|1|L5|A|362
9QIW|1|L5|A|363
9QIW|1|L5|G|364
9QIW|1|L5|U|365
9QIW|1|L5|A|366
9QIW|1|L5|C|367
*
9QIW|1|L5|G|374
9QIW|1|L5|G|375
9QIW|1|L5|A|376
9QIW|1|L5|A|377
9QIW|1|L5|A|378
9QIW|1|L5|G|379
*
9QIW|1|L8|C|21
9QIW|1|L8|U|22
9QIW|1|L8|C|23
9QIW|1|L8|G|24

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LY
60S ribosomal protein L26
Chain Lj
Large ribosomal subunit protein eL37
Chain Ll
60S ribosomal protein L39

Coloring options:


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