3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
Length
28 nucleotides
Bulged bases
9QIW|1|L5|G|409, 9QIW|1|L5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9QIW_005 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.313
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17917.1
Basepair signature
cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
Number of instances in this motif group
9

Unit IDs

9QIW|1|L5|U|380
9QIW|1|L5|U|381
9QIW|1|L5|G|382
9QIW|1|L5|A|383
9QIW|1|L5|A|384
9QIW|1|L5|A|385
9QIW|1|L5|A|386
9QIW|1|L5|G|387
9QIW|1|L5|A|388
9QIW|1|L5|A|389
9QIW|1|L5|C|390
*
9QIW|1|L5|G|401
9QIW|1|L5|A|402
9QIW|1|L5|G|403
9QIW|1|L5|U|404
9QIW|1|L5|U|405
9QIW|1|L5|C|406
9QIW|1|L5|A|407
9QIW|1|L5|A|408
9QIW|1|L5|G|409
9QIW|1|L5|A|410
9QIW|1|L5|G|411
9QIW|1|L5|G|412
9QIW|1|L5|G|413
9QIW|1|L5|C|414
9QIW|1|L5|G|415
*
9QIW|1|L8|C|19
9QIW|1|L8|A|20

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain CD
GTP-binding protein 4
Chain LC
60S ribosomal protein L4
Chain LP
60S ribosomal protein L17
Chain LY
60S ribosomal protein L26
Chain Ll
60S ribosomal protein L39

Coloring options:


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