3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GAC*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9QIW_009 not in the Motif Atlas
Homologous match to J3_8P9A_052
Geometric discrepancy: 0.1978
The information below is about J3_8P9A_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37832.1
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
5

Unit IDs

9QIW|1|L5|G|1969
9QIW|1|L5|A|1970
9QIW|1|L5|C|1971
*
9QIW|1|L5|G|1995
9QIW|1|L5|C|1996
9QIW|1|L5|U|1997
9QIW|1|L5|A|1998
9QIW|1|L5|A|1999
9QIW|1|L5|G|2000
9QIW|1|L5|G|2001
*
9QIW|1|L5|C|2016
9QIW|1|L5|A|2017
9QIW|1|L5|C|2018

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CF
mRNA turnover protein 4 homolog
Chain Lt
Large ribosomal subunit protein uL11

Coloring options:


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