3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
AGAAG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9QIW_014 not in the Motif Atlas
Homologous match to J3_8CRE_018
Geometric discrepancy: 0.1523
The information below is about J3_8CRE_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

9QIW|1|L5|A|2598
9QIW|1|L5|G|2599
9QIW|1|L5|A|2600
9QIW|1|L5|A|2601
9QIW|1|L5|G|2602
*
9QIW|1|L5|C|2737
9QIW|1|L5|C|2738
*
9QIW|1|L5|G|2742
9QIW|1|L5|A|2743
9QIW|1|L5|A|2744
9QIW|1|L5|A|2745
9QIW|1|L5|A|2746
9QIW|1|L5|U|2747

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain Lg
60S ribosomal protein L34
Chain Lp
60S ribosomal protein L37a

Coloring options:


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