J3_9QIW_017
3D structure
- PDB id
- 9QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9QIW|1|L5|A|4464, 9QIW|1|L5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QIW_017 not in the Motif Atlas
- Homologous match to J3_8CRE_023
- Geometric discrepancy: 0.0874
- The information below is about J3_8CRE_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_62630.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9QIW|1|L5|U|4463
9QIW|1|L5|A|4464
9QIW|1|L5|U|4465
9QIW|1|L5|C|4466
*
9QIW|1|L5|G|4491
9QIW|1|L5|U|4492
9QIW|1|L5|U|4493
*
9QIW|1|L5|A|4507
9QIW|1|L5|C|4508
9QIW|1|L5|U|4509
9QIW|1|L5|A|4510
9QIW|1|L5|A|4511
9QIW|1|L5|U|4512
9QIW|1|L5|A|4513
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Nucleolar GTP-binding protein 2
- Chain CC
- Guanine nucleotide-binding protein-like 3
- Chain CD
- GTP-binding protein 4
- Chain CE
- Protein LLP homolog
- Chain CH
- Ribosome biogenesis protein NSA2 homolog
- Chain LB
- 60S ribosomal protein L3
- Chain LO
- 60S ribosomal protein L13a
- Chain LV
- 60S ribosomal protein L23
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