J3_9QIW_018

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9QIW|1|L5|U|4882, 9QIW|1|L5|A|4938, 9QIW|1|L5|C|4940, 9QIW|1|L5|A|4943, 9QIW|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QIW|1|L5|G|4751
9QIW|1|L5|U|4752
9QIW|1|L5|U|4753
9QIW|1|L5|G|4754
*
9QIW|1|L5|C|4879
9QIW|1|L5|C|4880
9QIW|1|L5|U|4881
9QIW|1|L5|U|4882
9QIW|1|L5|C|4883
*
9QIW|1|L5|G|4936
9QIW|1|L5|C|4937
9QIW|1|L5|A|4938
9QIW|1|L5|C|4939
9QIW|1|L5|C|4940
9QIW|1|L5|G|4941
9QIW|1|L5|C|4942
9QIW|1|L5|A|4943
9QIW|1|L5|C|4944
9QIW|1|L5|G|4945
9QIW|1|L5|U|4946
9QIW|1|L5|U|4947
9QIW|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a