J3_9QQA_008

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_008 not in the Motif Atlas

Geometric match to J3_8CRE_078

Geometric discrepancy: 0.1613

The information below is about J3_8CRE_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|C|1219
9QQA|1|A2|C|1220
9QQA|1|A2|A|1221
9QQA|1|A2|G|1222
*
9QQA|1|A2|C|1646
9QQA|1|A2|C|1647
9QQA|1|A2|A|1648
9QQA|1|A2|G|1649
9QQA|1|A2|U|1650
9QQA|1|A2|A|1651
9QQA|1|A2|A|1652
*
9QQA|1|A2|U|1674
9QQA|1|A2|G|1675
9QQA|1|A2|A|1676
9QQA|1|A2|U|1677
9QQA|1|A2|U|1678
9QQA|1|A2|A2M|1679
9QQA|1|A2|A|1680
9QQA|1|A2|G|1681

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein eS28

Chain Ae

Small ribosomal subunit protein uS7

Chain Ap

Small ribosomal subunit protein uS9