J3_9QQA_024

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_024 not in the Motif Atlas

Geometric match to J3_4V9F_004

Geometric discrepancy: 0.2326

The information below is about J3_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9QQA|1|B5|G|1908
9QQA|1|B5|A|1909
9QQA|1|B5|C|1910
*
9QQA|1|B5|G|1934
9QQA|1|B5|C|1935
9QQA|1|B5|U|1936
9QQA|1|B5|A|1937
9QQA|1|B5|A|1938
9QQA|1|B5|G|1939
9QQA|1|B5|G|1940
*
9QQA|1|B5|C|1955
9QQA|1|B5|A|1956
9QQA|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

Large ribosomal subunit protein uL10

Chain Bt

60S ribosomal protein L12