J3_9QQA_032

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9QQA|1|B5|G|3804

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_032 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1454

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9QQA|1|B5|C|3669
9QQA|1|B5|G|3670
9QQA|1|B5|G|3671
*
9QQA|1|B5|C|3802
9QQA|1|B5|U|3803
9QQA|1|B5|G|3804
9QQA|1|B5|A|3805
9QQA|1|B5|C|3806
*
9QQA|1|B5|G|3914
9QQA|1|B5|G|3915
9QQA|1|B5|A|3916
9QQA|1|B5|C|3917
9QQA|1|B5|A|3918
9QQA|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15