J3_9QQA_036

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9QQA|1|B5|A|4210, 9QQA|1|B5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQA_036 not in the Motif Atlas

Geometric match to J3_8P9A_063

Geometric discrepancy: 0.1182

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9QQA|1|B5|U|4209
9QQA|1|B5|A|4210
9QQA|1|B5|U|4211
9QQA|1|B5|C|4212
*
9QQA|1|B5|G|4237
9QQA|1|B5|U|4238
9QQA|1|B5|U|4239
*
9QQA|1|B5|A|4253
9QQA|1|B5|C|4254
9QQA|1|B5|U|4255
9QQA|1|B5|A|4256
9QQA|1|B5|A|4257
9QQA|1|B5|U|4258
9QQA|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23