J3_9QQA_037

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9QQA|1|B5|U|4621, 9QQA|1|B5|A|4677, 9QQA|1|B5|C|4679, 9QQA|1|B5|A|4682, 9QQA|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|G|4498
9QQA|1|B5|U|4499
9QQA|1|B5|U|4500
9QQA|1|B5|G|4501
*
9QQA|1|B5|C|4618
9QQA|1|B5|C|4619
9QQA|1|B5|U|4620
9QQA|1|B5|U|4621
9QQA|1|B5|C|4622
*
9QQA|1|B5|G|4675
9QQA|1|B5|C|4676
9QQA|1|B5|A|4677
9QQA|1|B5|C|4678
9QQA|1|B5|C|4679
9QQA|1|B5|G|4680
9QQA|1|B5|C|4681
9QQA|1|B5|A|4682
9QQA|1|B5|C|4683
9QQA|1|B5|G|4684
9QQA|1|B5|U|4685
9QQA|1|B5|U|4686
9QQA|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain Bf

60S ribosomal protein L35a