J3_9QQB_016
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9QQB|1|A2|U|1536, 9QQB|1|A2|G|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQB_016 not in the Motif Atlas
- Geometric match to J3_8CRE_086
- Geometric discrepancy: 0.1494
- The information below is about J3_8CRE_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9QQB|1|A2|C|1533
9QQB|1|A2|A|1534
9QQB|1|A2|C|1535
9QQB|1|A2|U|1536
9QQB|1|A2|G|1537
*
9QQB|1|A2|C|1598
9QQB|1|A2|G|1599
9QQB|1|A2|U|1600
9QQB|1|A2|G|1601
9QQB|1|A2|A|1602
9QQB|1|A2|U|1603
9QQB|1|A2|G|1604
9QQB|1|A2|G|1605
*
9QQB|1|A2|C|1636
9QQB|1|A2|G|1637
9QQB|1|A2|A|1638
9QQB|1|A2|G|1639
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ae
- Small ribosomal subunit protein uS7
- Chain Ar
- Small ribosomal subunit protein uS13
- Chain As
- 40S ribosomal protein S19
- Chain Ay
- Small ribosomal subunit protein eS25
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