J3_9QQB_025

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_025 not in the Motif Atlas

Geometric match to J3_4V9F_004

Geometric discrepancy: 0.2282

The information below is about J3_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|G|1908
9QQB|1|B5|A|1909
9QQB|1|B5|C|1910
*
9QQB|1|B5|G|1934
9QQB|1|B5|C|1935
9QQB|1|B5|U|1936
9QQB|1|B5|A|1937
9QQB|1|B5|A|1938
9QQB|1|B5|G|1939
9QQB|1|B5|G|1940
*
9QQB|1|B5|C|1955
9QQB|1|B5|A|1956
9QQB|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

Large ribosomal subunit protein uL10

Chain Bt

60S ribosomal protein L12