J3_9QQB_027

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9QQB|1|B5|U|2631, 9QQB|1|B5|A|2632, 9QQB|1|B5|U|2633

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_027 not in the Motif Atlas

Geometric match to J3_8CRE_014

Geometric discrepancy: 0.1126

The information below is about J3_8CRE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|G|2245
9QQB|1|B5|A|2246
9QQB|1|B5|A|2247
9QQB|1|B5|G|2248
*
9QQB|1|B5|C|2628
9QQB|1|B5|C|2629
9QQB|1|B5|A2M|2630
9QQB|1|B5|U|2631
9QQB|1|B5|A|2632
9QQB|1|B5|U|2633
9QQB|1|B5|C|2634
*
9QQB|1|B5|G|2643
9QQB|1|B5|U|2644
9QQB|1|B5|C|2645

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like