J3_9QQB_031

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_031 not in the Motif Atlas

Geometric match to J3_8P9A_087

Geometric discrepancy: 0.2406

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQB|1|B5|U|2418
9QQB|1|B5|G|2419
*
9QQB|1|B5|C|2428
9QQB|1|B5|G|2429
9QQB|1|B5|A|2430
9QQB|1|B5|C|2431
9QQB|1|B5|C|2432
*
9QQB|1|B5|G|2599
9QQB|1|B5|A|2600

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34