J3_9QQB_036

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9QQB|1|B5|A|4210, 9QQB|1|B5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_036 not in the Motif Atlas

Geometric match to J3_8P9A_063

Geometric discrepancy: 0.1053

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9QQB|1|B5|U|4209
9QQB|1|B5|A|4210
9QQB|1|B5|U|4211
9QQB|1|B5|C|4212
*
9QQB|1|B5|G|4237
9QQB|1|B5|U|4238
9QQB|1|B5|U|4239
*
9QQB|1|B5|A|4253
9QQB|1|B5|C|4254
9QQB|1|B5|U|4255
9QQB|1|B5|A|4256
9QQB|1|B5|A|4257
9QQB|1|B5|U|4258
9QQB|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23