J3_9QQB_037

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9QQB|1|B5|U|4621, 9QQB|1|B5|A|4677, 9QQB|1|B5|C|4679, 9QQB|1|B5|A|4682, 9QQB|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|G|4498
9QQB|1|B5|U|4499
9QQB|1|B5|U|4500
9QQB|1|B5|G|4501
*
9QQB|1|B5|C|4618
9QQB|1|B5|C|4619
9QQB|1|B5|U|4620
9QQB|1|B5|U|4621
9QQB|1|B5|C|4622
*
9QQB|1|B5|G|4675
9QQB|1|B5|C|4676
9QQB|1|B5|A|4677
9QQB|1|B5|C|4678
9QQB|1|B5|C|4679
9QQB|1|B5|G|4680
9QQB|1|B5|C|4681
9QQB|1|B5|A|4682
9QQB|1|B5|C|4683
9QQB|1|B5|G|4684
9QQB|1|B5|U|4685
9QQB|1|B5|U|4686
9QQB|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain Bf

60S ribosomal protein L35a