J3_9QQL_027

3D structure

PDB id

9QQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPS15 P131 Mutant Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

9QQL|1|B2|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQL_027 not in the Motif Atlas

Geometric match to J3_8QYX_024

Geometric discrepancy: 0.0472

The information below is about J3_8QYX_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.3

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

9QQL|1|B2|C|9
9QQL|1|B2|C|10
9QQL|1|B2|A|11
9QQL|1|B2|U|12
9QQL|1|B2|A|13
9QQL|1|B2|C|14
*
9QQL|1|B2|G|65
9QQL|1|B2|G|66
*
9QQL|1|B2|U|109
9QQL|1|B2|G|110

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain G2

Large ribosomal subunit protein uL18

Chain N2

Large ribosomal subunit protein eL21