J3_9QQQ_006
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9QQQ|1|A|U|871, 9QQQ|1|A|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_006 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.2441
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9QQQ|1|A|C|826
9QQQ|1|A|U|827
9QQQ|1|A|U|828
9QQQ|1|A|G|829
*
9QQQ|1|A|C|857
9QQQ|1|A|G|858
9QQQ|1|A|G|859
9QQQ|1|A|A|860
9QQQ|1|A|G|861
*
9QQQ|1|A|C|868
9QQQ|1|A|G|869
9QQQ|1|A|U|870
9QQQ|1|A|U|871
9QQQ|1|A|A|872
9QQQ|1|A|A|873
9QQQ|1|A|G|874
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain H
- Small ribosomal subunit protein uS8
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: