J3_9QQQ_031
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9QQQ|1|a|A|2518, 9QQQ|1|a|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_031 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1714
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9QQQ|1|a|C|2517
9QQQ|1|a|A|2518
9QQQ|1|a|U|2519
9QQQ|1|a|C|2520
*
9QQQ|1|a|G|2545
9QQQ|1|a|U|2546
9QQQ|1|a|A|2547
*
9QQQ|1|a|U|2561
9QQQ|1|a|U|2562
9QQQ|1|a|U|2563
9QQQ|1|a|A|2564
9QQQ|1|a|A|2565
9QQQ|1|a|A|2566
9QQQ|1|a|G|2567
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: