J3_9QSJ_028
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9QSJ|1|a|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QSJ_028 not in the Motif Atlas
- Homologous match to J3_7A0S_009
- Geometric discrepancy: 0.2149
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9QSJ|1|a|C|2091
9QSJ|1|a|U|2092
9QSJ|1|a|G|2093
*
9QSJ|1|a|C|2196
9QSJ|1|a|U|2197
9QSJ|1|a|A|2198
9QSJ|1|a|A|2199
9QSJ|1|a|C|2200
*
9QSJ|1|a|G|2223
9QSJ|1|a|G|2224
9QSJ|1|a|A|2225
9QSJ|1|a|C|2226
9QSJ|1|a|A|2227
9QSJ|1|a|G|2228
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain h
- Large ribosomal subunit protein bL9
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: