J3_9R9O_038
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAC*GGACUAU*AUGGAAGUUU
- Length
- 20 nucleotides
- Bulged bases
- 9R9O|1|C2|U|1413, 9R9O|1|C2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_038 not in the Motif Atlas
- Homologous match to J3_9H3G_042
- Geometric discrepancy: 0.1695
- The information below is about J3_9H3G_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9R9O|1|C2|A|1336
9R9O|1|C2|A|1337
9R9O|1|C2|C|1338
*
9R9O|1|C2|G|1386
9R9O|1|C2|G|1387
9R9O|1|C2|A|1388
9R9O|1|C2|C|1389
9R9O|1|C2|U|1390
9R9O|1|C2|A|1391
9R9O|1|C2|U|1392
*
9R9O|1|C2|A|1406
9R9O|1|C2|U|1407
9R9O|1|C2|G|1408
9R9O|1|C2|G|1409
9R9O|1|C2|A|1410
9R9O|1|C2|A|1411
9R9O|1|C2|G|1412
9R9O|1|C2|U|1413
9R9O|1|C2|U|1414
9R9O|1|C2|U|1415
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-B
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
- Chain Sg
- Guanine nucleotide-binding protein subunit beta-like protein
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