J3_9R9O_041
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9R9O|1|C4|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_041 not in the Motif Atlas
- Geometric match to J3_8QYX_024
- Geometric discrepancy: 0.0993
- The information below is about J3_8QYX_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9R9O|1|C4|C|9
9R9O|1|C4|C|10
9R9O|1|C4|A|11
9R9O|1|C4|U|12
9R9O|1|C4|A|13
9R9O|1|C4|U|14
*
9R9O|1|C4|A|66
9R9O|1|C4|G|67
*
9R9O|1|C4|U|111
9R9O|1|C4|G|112
Current chains
- Chain C4
- 5S ribosomal RNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10
- Chain LT
- 60S ribosomal protein L21-A
Coloring options: