J3_9R9P_004

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|A|369
9R9P|1|C1|U|370
9R9P|1|C1|G|371
9R9P|1|C1|A|372
9R9P|1|C1|A|373
9R9P|1|C1|A|374
9R9P|1|C1|A|375
9R9P|1|C1|G|376
*
9R9P|1|C1|C|403
9R9P|1|C1|G|404
*
9R9P|1|C3|C|19
9R9P|1|C3|U|20

Current chains

Chain C1

25S ribosomal RNA

Chain C3

5.8S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A

Chain Ll

60S ribosomal protein L39