J3_9R9P_004
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9P_004 not in the Motif Atlas
- Geometric match to J3_9PN5_005
- Geometric discrepancy: 0.061
- The information below is about J3_9PN5_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9R9P|1|C1|A|369
9R9P|1|C1|U|370
9R9P|1|C1|G|371
9R9P|1|C1|A|372
9R9P|1|C1|A|373
9R9P|1|C1|A|374
9R9P|1|C1|A|375
9R9P|1|C1|G|376
*
9R9P|1|C1|C|403
9R9P|1|C1|G|404
*
9R9P|1|C3|C|19
9R9P|1|C3|U|20
Current chains
- Chain C1
- 25S ribosomal RNA
- Chain C3
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L39
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