J3_9R9P_016

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUG*CUUAUU*AAGACAUU

Length

18 nucleotides

Bulged bases

9R9P|1|C1|U|2514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|A|2432
9R9P|1|C1|U|2433
9R9P|1|C1|U|2434
9R9P|1|C1|G|2435
*
9R9P|1|C1|C|2512
9R9P|1|C1|U|2513
9R9P|1|C1|U|2514
9R9P|1|C1|A|2515
9R9P|1|C1|U|2516
9R9P|1|C1|U|2517
*
9R9P|1|C1|A|2590
9R9P|1|C1|A|2591
9R9P|1|C1|G|2592
9R9P|1|C1|A|2593
9R9P|1|C1|C|2594
9R9P|1|C1|A|2595
9R9P|1|C1|U|2596
9R9P|1|C1|U|2597

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A

Chain Li

60S ribosomal protein L36-A