J3_9RFW_012

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9RFW|1|a|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|C|2091
9RFW|1|a|U|2092
9RFW|1|a|G|2093
*
9RFW|1|a|C|2196
9RFW|1|a|U|2197
9RFW|1|a|A|2198
9RFW|1|a|A|2199
9RFW|1|a|C|2200
*
9RFW|1|a|G|2223
9RFW|1|a|G|2224
9RFW|1|a|A|2225
9RFW|1|a|C|2226
9RFW|1|a|A|2227
9RFW|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28