J3_9RHU_020

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RHU_020 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0428

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.4

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

12

Unit IDs

9RHU|1|A3|U|380
9RHU|1|A3|U|381
9RHU|1|A3|G|382
9RHU|1|A3|A|383
9RHU|1|A3|A|384
9RHU|1|A3|A|385
9RHU|1|A3|A|386
9RHU|1|A3|G|387
*
9RHU|1|A3|C|414
9RHU|1|A3|G|415
*
9RHU|1|C3|C|19
9RHU|1|C3|A|20

Current chains

Chain A3

28S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain F3

Large ribosomal subunit protein uL4

Chain U2

Ribosomal protein L26

Chain h2

60S ribosomal protein L39-like