J3_9RHU_023

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9RHU|1|A3|A2M|1489, 9RHU|1|A3|G|1596, 9RHU|1|A3|A|1597

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|U|1486
9RHU|1|A3|G|1487
9RHU|1|A3|A|1488
9RHU|1|A3|A2M|1489
9RHU|1|A3|C|1490
9RHU|1|A3|PSU|1491
9RHU|1|A3|A|1492
*
9RHU|1|A3|U|1577
9RHU|1|A3|A|1578
9RHU|1|A3|G|1579
*
9RHU|1|A3|C|1595
9RHU|1|A3|G|1596
9RHU|1|A3|A|1597
9RHU|1|A3|A|1598

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain G2

Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein

Chain J2

Ribosomal protein L15

Chain f2

Ribosomal protein L37

Chain h2

60S ribosomal protein L39-like