J3_9RHU_024

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|1501
9RHU|1|A3|A|1502
9RHU|1|A3|G|1503
*
9RHU|1|A3|C|1535
9RHU|1|A3|G|1536
9RHU|1|A3|PSU|1537
9RHU|1|A3|A|1538
9RHU|1|A3|G|1539
*
9RHU|1|A3|U|1564
9RHU|1|A3|C|1565
9RHU|1|A3|C|1566
9RHU|1|A3|G|1567

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain MB

60S ribosomal protein L34

Chain N2

Ribosomal protein L19

Chain k2

60S ribosomal protein L37a