J3_9RHU_028

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9RHU|1|A3|U|2631, 9RHU|1|A3|A|2632, 9RHU|1|A3|U|2633

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|2245
9RHU|1|A3|A|2246
9RHU|1|A3|A|2247
9RHU|1|A3|G|2248
*
9RHU|1|A3|C|2628
9RHU|1|A3|C|2629
9RHU|1|A3|A2M|2630
9RHU|1|A3|U|2631
9RHU|1|A3|A|2632
9RHU|1|A3|U|2633
9RHU|1|A3|C|2634
*
9RHU|1|A3|G|2643
9RHU|1|A3|U|2644
9RHU|1|A3|C|2645

Current chains

Chain A3

28S rRNA

Nearby chains

Chain MB

60S ribosomal protein L34

Chain f2

Ribosomal protein L37

Chain h2

60S ribosomal protein L39-like