J3_9RHU_039

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9RHU|1|A3|U|4621, 9RHU|1|A3|A|4677, 9RHU|1|A3|C|4679, 9RHU|1|A3|A|4682, 9RHU|1|A3|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|4498
9RHU|1|A3|U|4499
9RHU|1|A3|U|4500
9RHU|1|A3|G|4501
*
9RHU|1|A3|C|4618
9RHU|1|A3|C|4619
9RHU|1|A3|U|4620
9RHU|1|A3|U|4621
9RHU|1|A3|C|4622
*
9RHU|1|A3|G|4675
9RHU|1|A3|C|4676
9RHU|1|A3|A|4677
9RHU|1|A3|C|4678
9RHU|1|A3|C|4679
9RHU|1|A3|G|4680
9RHU|1|A3|C|4681
9RHU|1|A3|A|4682
9RHU|1|A3|C|4683
9RHU|1|A3|G|4684
9RHU|1|A3|U|4685
9RHU|1|A3|U|4686
9RHU|1|A3|C|4687

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A2

60S ribosomal protein L6

Chain I2

60S ribosomal protein L14

Chain K2

Large ribosomal subunit protein uL13

Chain b2

60S ribosomal protein L35a