J3_9RHU_041
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9RHU|1|B3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RHU_041 not in the Motif Atlas
- Geometric match to J3_8QYX_024
- Geometric discrepancy: 0.0326
- The information below is about J3_8QYX_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RHU|1|B3|C|9
9RHU|1|B3|C|10
9RHU|1|B3|A|11
9RHU|1|B3|U|12
9RHU|1|B3|A|13
9RHU|1|B3|C|14
*
9RHU|1|B3|G|65
9RHU|1|B3|G|66
*
9RHU|1|B3|U|109
9RHU|1|B3|G|110
Current chains
- Chain B3
- 5S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain E2
- 60S ribosomal protein L10
- Chain G3
- Large ribosomal subunit protein uL18
- Chain P2
- 60S ribosomal protein L21
Coloring options: