J3_9RTU_016

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9RTU|1|A|A|2518, 9RTU|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RTU_016 not in the Motif Atlas

Geometric match to J3_8B0X_023

Geometric discrepancy: 0.0861

The information below is about J3_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9RTU|1|A|C|2517
9RTU|1|A|A|2518
9RTU|1|A|U|2519
9RTU|1|A|C|2520
*
9RTU|1|A|G|2545
9RTU|1|A|U|2546
9RTU|1|A|A|2547
*
9RTU|1|A|U|2561
9RTU|1|A|U|2562
9RTU|1|A|U|2563
9RTU|1|A|A|2564
9RTU|1|A|A|2565
9RTU|1|A|A|2566
9RTU|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14