J3_9RU7_006
3D structure
- PDB id
- 9RU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RU7_006 not in the Motif Atlas
- Homologous match to J3_9H3G_013
- Geometric discrepancy: 0.1149
- The information below is about J3_9H3G_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.4
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9RU7|1|L5|C|1546
9RU7|1|L5|A|1547
9RU7|1|L5|G|1548
*
9RU7|1|L5|C|1580
9RU7|1|L5|G|1581
9RU7|1|L5|U|1582
9RU7|1|L5|A|1583
9RU7|1|L5|G|1584
*
9RU7|1|L5|U|1609
9RU7|1|L5|C|1610
9RU7|1|L5|C|1611
9RU7|1|L5|G|1612
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LR
- 60S ribosomal protein L19
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lp
- Large ribosomal subunit protein eL43
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