J3_9RU7_036

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9RU7|1|S2|U|1535, 9RU7|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|S2|C|1532
9RU7|1|S2|A|1533
9RU7|1|S2|C|1534
9RU7|1|S2|U|1535
9RU7|1|S2|G|1536
*
9RU7|1|S2|C|1597
9RU7|1|S2|G|1598
9RU7|1|S2|U|1599
9RU7|1|S2|G|1600
9RU7|1|S2|A|1601
9RU7|1|S2|U|1602
9RU7|1|S2|G|1603
9RU7|1|S2|G|1604
*
9RU7|1|S2|C|1635
9RU7|1|S2|G|1636
9RU7|1|S2|A|1637
9RU7|1|S2|G|1638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S6

Transfer RNA; tRNA

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25