J3_9RU9_027
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 9RU9|1|S2|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RU9_027 not in the Motif Atlas
- Homologous match to J3_9H3G_029
- Geometric discrepancy: 0.0704
- The information below is about J3_9H3G_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9RU9|1|S2|A|40
9RU9|1|S2|G|41
9RU9|1|S2|A|42
9RU9|1|S2|U|43
9RU9|1|S2|U|44
9RU9|1|S2|A|45
9RU9|1|S2|A|46
9RU9|1|S2|G|47
*
9RU9|1|S2|C|479
9RU9|1|S2|G|480
9RU9|1|S2|C|481
9RU9|1|S2|G|482
9RU9|1|S2|C|483
9RU9|1|S2|A2M|484
9RU9|1|S2|A|485
9RU9|1|S2|A|486
9RU9|1|S2|U|487
*
9RU9|1|S2|A2M|512
9RU9|1|S2|G|513
9RU9|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
Coloring options: