J3_9RVC_005
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 9RVC|1|A|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_005 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2949
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|A|U|680
9RVC|1|A|G|681
*
9RVC|1|A|C|725
9RVC|1|A|A|726
9RVC|1|A|C|727
9RVC|1|A|C|728
9RVC|1|A|A|729
9RVC|1|A|G|730
9RVC|1|A|U|731
9RVC|1|A|G|732
9RVC|1|A|G|733
*
9RVC|1|A|C|740
9RVC|1|A|G|741
9RVC|1|A|A|742
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6
- Chain K
- Small ribosomal subunit protein uS11
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18
- Chain X
- spa mRNA
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