J3_9RVC_007
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_007 not in the Motif Atlas
- Homologous match to J3_6CZR_061
- Geometric discrepancy: 0.1161
- The information below is about J3_6CZR_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|A|C|946
9RVC|1|A|A|947
9RVC|1|A|A|948
9RVC|1|A|G|949
*
9RVC|1|A|C|1355
9RVC|1|A|U|1356
9RVC|1|A|A|1357
9RVC|1|A|G|1358
9RVC|1|A|U|1359
9RVC|1|A|A|1360
9RVC|1|A|A|1361
*
9RVC|1|A|U|1383
9RVC|1|A|G|1384
9RVC|1|A|A|1385
9RVC|1|A|A|1386
9RVC|1|A|U|1387
9RVC|1|A|A|1388
9RVC|1|A|C|1389
9RVC|1|A|G|1390
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
Coloring options: