J3_9RVC_017

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RVC_017 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0654

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9RVC|1|a|G|30
9RVC|1|a|C|31
*
9RVC|1|a|G|520
9RVC|1|a|U|521
9RVC|1|a|G|522
9RVC|1|a|A|523
9RVC|1|a|A|524
9RVC|1|a|A|525
9RVC|1|a|A|526
9RVC|1|a|G|527
*
9RVC|1|a|C|554
9RVC|1|a|C|555

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24