J3_9RVC_025

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9RVC|1|a|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RVC_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1925

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9RVC|1|a|C|1335
9RVC|1|a|G|1336
9RVC|1|a|A|1337
9RVC|1|a|U|1338
9RVC|1|a|U|1339
9RVC|1|a|G|1340
*
9RVC|1|a|C|1669
9RVC|1|a|A|1670
9RVC|1|a|A|1671
*
9RVC|1|a|U|1683
9RVC|1|a|A|1684
9RVC|1|a|A|1685
9RVC|1|a|G|1686

Current chains

Chain a

23S rRNA

Nearby chains