J3_9RVC_027
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGGGUC*GAUAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 9RVC|1|a|C|1382, 9RVC|1|a|A|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RVC_027 not in the Motif Atlas
- Homologous match to J3_7A0S_018
- Geometric discrepancy: 0.1308
- The information below is about J3_7A0S_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.3
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9RVC|1|a|U|1381
9RVC|1|a|C|1382
9RVC|1|a|G|1383
9RVC|1|a|G|1384
9RVC|1|a|G|1385
9RVC|1|a|U|1386
9RVC|1|a|C|1387
*
9RVC|1|a|G|1418
9RVC|1|a|A|1419
9RVC|1|a|U|1420
9RVC|1|a|A|1421
9RVC|1|a|A|1422
*
9RVC|1|a|U|1439
9RVC|1|a|A|1440
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: