J3_9S7D_016

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCAG*CGCAAGU*AAAGACG

Length

20 nucleotides

Bulged bases

9S7D|1|AA|U|623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9S7D_016 not in the Motif Atlas

Homologous match to J3_8B0X_010

Geometric discrepancy: 0.5826

The information below is about J3_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01343.1

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9S7D|1|AA|C|621
9S7D|1|AA|U|622
9S7D|1|AA|U|623
9S7D|1|AA|C|624
9S7D|1|AA|A|625
9S7D|1|AA|G|626
*
9S7D|1|AA|C|655
9S7D|1|AA|G|656
9S7D|1|AA|C|657
9S7D|1|AA|A|658
9S7D|1|AA|A|659
9S7D|1|AA|G|660
9S7D|1|AA|U|661
*
9S7D|1|AA|A|670
9S7D|1|AA|A|671
9S7D|1|AA|A|672
9S7D|1|AA|G|673
9S7D|1|AA|A|674
9S7D|1|AA|C|675
9S7D|1|AA|G|676

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A1

Small ribosomal subunit protein mS35

Chain AC

Small ribosomal subunit protein uS3m

Chain AD

Small ribosomal subunit protein uS5m

Chain AG

Small ribosomal subunit protein uS9m

Chain AH

Small ribosomal subunit protein uS10m

Chain AK

Small ribosomal subunit protein uS14m