J3_9SLG_024

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SLG_024 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2296

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|G|1057
9SLG|1|a|G|1058
9SLG|1|a|A|1059
*
9SLG|1|a|U|1083
9SLG|1|a|U|1084
9SLG|1|a|U|1085
9SLG|1|a|A|1086
9SLG|1|a|A|1087
9SLG|1|a|A|1088
9SLG|1|a|G|1089
*
9SLG|1|a|C|1104
9SLG|1|a|A|1105
9SLG|1|a|C|1106

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A