J3_9SLG_026

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9SLG|1|a|A|1611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SLG_026 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.14

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9SLG|1|a|C|1308
9SLG|1|a|A|1309
9SLG|1|a|A|1310
9SLG|1|a|G|1311
*
9SLG|1|a|C|1607
9SLG|1|a|C|1608
9SLG|1|a|C|1609
9SLG|1|a|A|1610
9SLG|1|a|A|1611
9SLG|1|a|A|1612
9SLG|1|a|C|1613
*
9SLG|1|a|G|1622
9SLG|1|a|U|1623
9SLG|1|a|G|1624

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34