J3_9SLG_033
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9SLG|1|a|A|2522, 9SLG|1|a|U|2523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SLG_033 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1866
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9SLG|1|a|C|2521
9SLG|1|a|A|2522
9SLG|1|a|U|2523
9SLG|1|a|C|2524
*
9SLG|1|a|G|2549
9SLG|1|a|U|2550
9SLG|1|a|A|2551
*
9SLG|1|a|U|2565
9SLG|1|a|U|2566
9SLG|1|a|U|2567
9SLG|1|a|A|2568
9SLG|1|a|A|2569
9SLG|1|a|A|2570
9SLG|1|a|G|2571
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: