J3_9SRB_016
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9SRB|1|1|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRB_016 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.1068
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SRB|1|1|U|2331
9SRB|1|1|U|2332
9SRB|1|1|G|2333
*
9SRB|1|1|C|2436
9SRB|1|1|U|2437
9SRB|1|1|A|2438
9SRB|1|1|A|2439
9SRB|1|1|C|2440
*
9SRB|1|1|G|2453
9SRB|1|1|G|2454
9SRB|1|1|A|2455
9SRB|1|1|C|2456
9SRB|1|1|A|2457
9SRB|1|1|G|2458
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BM
- Large ribosomal subunit protein eL15
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